miRBase entry: rno-mir-293

Stem-loop rno-mir-293


Accession
MI0012609
Description
Rattus norvegicus rno-mir-293 precursor miRNA
Gene family
MIPF0000068; mir-290

Literature search
4 open access papers mention rno-mir-293
(4 sentences)

Sequence

2085 reads, 14 reads per million, 135 experiments
cugugauACUCAAACUGUGUGACACUUUguuucuuuuggaagaAGUGCCGCAAAGUUUGCAGUGUuaccgau
..((((((((((((((.((((.((((((.((((....)))))))))).)))).)))))).))))))))....

Structure
--cu        -      G    A      g    u 
    gugauACU CAAACU UGUG CACUUU uuuc u
    |||||||| |||||| |||| |||||| ||||  
    cauUGUGA GUUUGA ACGC GUGAag aagg u
uagc        C      A    C      -    u 


Annotation confidence Not enough data
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Genome context
chr1: 64537107-64537178 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from rno-mir-293
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-293-5p

Accession MIMAT0012847
Description Rattus norvegicus rno-miR-293-5p mature miRNA
Sequence 8 - ACUCAAACUGUGUGACACUUU - 28
Evidence experimental
SOLiD [2]

Mature rno-miR-293-3p

Accession MIMAT0017365
Description Rattus norvegicus rno-miR-293-3p mature miRNA
Sequence 44 - AGUGCCGCAAAGUUUGCAGUGU - 65
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39