Stem-loop sequence rno-mir-294

Accession

MI0012610 (change log)

Description

Rattus norvegicus miR-294 stem-loop

Gene family

MIPF0000068; mir-290

Literature search

6 open access papers mention rno-mir-294
(29 sentences)

Stem-loop

   a    c    u            c  a   aa   u 
5'  uagc augc caaaauggaggc cu ucu  gcu u
    |||| |||| |||||||||||| || |||  |||  
3'  gucg ugug guuuuaccuucg ga aga  uga u
   -    u    u            u  a   --   a 

Deep sequencing

398 reads, 0 reads per million, 72 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 64536746-64536816 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-294

• rno-mir-290: chr1: 64538705-64538785 [-]
• rno-mir-291a: chr1: 64538407-64538488 [-]
• rno-mir-292: chr1: 64538119-64538200 [-]
• rno-mir-291b: chr1: 64537831-64537938 [-]
• rno-mir-293: chr1: 64537107-64537178 [-]
• rno-mir-294: chr1: 64536746-64536816 [-]
• rno-mir-295-1: chr1: 64536623-64536703 [-]

Database links

• EntrezGene:Mir294
• miRBase Tracker:MI0012610

Mature sequence rno-miR-294

• Accession: MIMAT0012848
• Sequence: 10 - cucaaaauggaggcccuaucu - 30
• Deep sequencing: 4 reads, 3 experiments
• Evidence: not experimental
• Predicted targets:
  • TargetScanVert:rno-miR-294
  • miRDB:rno-miR-294
  • microrna.org:rno-miR-294

References

1. PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).