miRBase entry: rno-mir-764

Stem-loop rno-mir-764


Accession
MI0012616
Description
Rattus norvegicus rno-mir-764 precursor miRNA
Gene family
MIPF0000707; mir-764

Literature search
3 open access papers mention rno-mir-764
(10 sentences)

Sequence

8507 reads, 60 reads per million, 111 experiments
ucaacacaaucaaaaucucggaggcaGGUGCUCACAUGUCCUCCUCCAugccuacacauacaugGAGGAGGCCAUAGUGGCAACUGUcaccaugauugauuucguugg
.((((..(((((..(((..((.(((((.(((.((((((.(((((((((((..........))))))))))).))).)))))).))))).))..))))))))..)))).

Structure
u    ac     aa   uc  a     G   U   -   U           ccua 
 caac  aauca  auc  gg ggcaG UGC CAC AUG CCUCCUCCAug    c
 ||||  |||||  |||  || ||||| ||| ||| ||| |||||||||||     
 guug  uuagu  uag  cc cUGUC ACG GUG UAC GGAGGAGguac    a
g    cu     --   ua  a     A   -   A   C           auac 


Annotation confidence High
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Genome context
chrX: 118123251-118123358 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-764
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-764-5p

Accession MIMAT0012854
Description Rattus norvegicus rno-miR-764-5p mature miRNA
Sequence 27 - GGUGCUCACAUGUCCUCCUCCA - 48
Evidence experimental
SOLiD [2]

Mature rno-miR-764-3p

Accession MIMAT0017370
Description Rattus norvegicus rno-miR-764-3p mature miRNA
Sequence 65 - GAGGAGGCCAUAGUGGCAACUGU - 87
Evidence experimental
SOLiD [2]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249

  2. PubMed ID: 18215311
    miRNAminer: a tool for homologous microRNA gene search
    "Artzi S, Kiezun A, Shomron N"
    "BMC Bioinformatics (2008) 9:39