Stem-loop sequence rno-mir-666

Accession MI0012617
Description Rattus norvegicus miR-666 stem-loop
Gene family MIPF0000782; mir-666
Stem-loop 
   -au  --ug    c   -        --a  -     gag      -  ag 
cug   uc    ccug gug gagcgggc   cg gcugu   agcccc cu  g
|||   ||    |||| ||| ||||||||   || |||||   |||||| ||   
gac   ag    ggac cgc cucguccg   gu cgacg   ucgggg ga  u
   agc  ugaa    a   a        cua  g     ---      c  ca
Get sequence
Genome context
Coordinates (RGSC3.4) Overlapping transcripts
6: 134397021-134397119 [+]
intergenic
Clustered miRNAs
< 10kb from rno-mir-666
rno-mir-379 6: 134388198-134388282 [+]
rno-mir-411 6: 134389347-134389422 [+]
rno-mir-299b 6: 134389793-134389910 [-]
rno-mir-299a 6: 134389822-134389884 [+]
rno-mir-3579 6: 134390971-134391083 [-]
rno-mir-380 6: 134390988-134391064 [+]
rno-mir-323 6: 134391697-134391782 [+]
rno-mir-758 6: 134391996-134392073 [+]
rno-mir-329 6: 134392666-134392762 [+]
rno-mir-494 6: 134394868-134394950 [+]
rno-mir-679 6: 134395062-134395198 [+]
rno-mir-666 6: 134397021-134397119 [+]
rno-mir-543 6: 134397158-134397237 [+]
rno-mir-495 6: 134399218-134399297 [+]
rno-mir-667 6: 134400500-134400591 [+]
rno-mir-376c 6: 134403524-134403607 [+]
rno-mir-376b 6: 134404180-134404265 [+]
rno-mir-3595 6: 134404672-134404791 [-]
rno-mir-376a 6: 134404690-134404771 [+]
rno-mir-300 6: 134405237-134405315 [+]
Database links
  • ENTREZGENE: 100314140;Mir666

Mature sequence rno-miR-666-5p

Accession MIMAT0012855
Previous IDs rno-miR-666
Sequence

19 -  

agcgggcacggcugugagag

 - 38

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

Mature sequence rno-miR-666-3p

Accession MIMAT0017371
Previous IDs rno-miR-666*
Sequence

56 -  

ggcugcagcgugaucgccugcuc

 - 78

Get sequence
Evidence experimental; SOLiD [2]
Predicted targets

References

1
PMID:18215311 "miRNAminer: a tool for homologous microRNA gene search" Artzi S, Kiezun A, Shomron N BMC Bioinformatics. 9:39(2008).
2
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).