Stem-loop rno-mir-666

Accession

MI0012617

Description

Rattus norvegicus rno-mir-666 precursor miRNA

Literature search

2 open access papers mention rno-mir-666
(9 sentences)

Sequence

21327 reads, 25 reads per million, 298 experiments

cugauucugccugcguggAGCGGGCACGGCUGUGAGAGcccccuagguacagcggGGCUGCAGCGUGAUCGCCUGCUCacgcacaggaagugacgacag
......((.((((.(((((((((((.(((((((...((((((((......)).))))))))))).))...)))))))).))).)))).)).........

Structure

---cugauu  g    c   -        --A  -     GAG      -  ag 
         cu ccug gug gAGCGGGC   CG GCUGU   AGcccc cu  g
         || |||| ||| ||||||||   || |||||   |||||| ||   
         ga ggac cgc CUCGUCCG   GU CGACG   UCGGgg ga  u
gacagcagu  a    a   a        CUA  G     ---      c  ca 

Annotation confidence High

Genome context

chr6: 133866523-133866621 [+]

Clustered miRNAs

20 other miRNAs are < 10 kb from rno-mir-666

Mature rno-miR-666-5p

• Accession: MIMAT0012855
• Description: Rattus norvegicus rno-miR-666-5p mature miRNA
• Sequence: 19 - AGCGGGCACGGCUGUGAGAG - 38
• Evidence: experimental ; SOLiD [2]

Mature rno-miR-666-3p

• Accession: MIMAT0017371
• Description: Rattus norvegicus rno-miR-666-3p mature miRNA
• Sequence: 56 - GGCUGCAGCGUGAUCGCCUGCUC - 78
• Evidence: experimental ; SOLiD [2]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249


2. PubMed ID: 18215311
   miRNAminer: a tool for homologous microRNA gene search
   "Artzi S, Kiezun A, Shomron N"
   "BMC Bioinformatics (2008) 9:39