Stem-loop hvt-mir-H16

Accession

MI0012629

Description

Herpesvirus of turkeys hvt-mir-H16 precursor miRNA

Gene family

MIPF0000773; hvt-mir-H16

Sequence

acccUUCAUGUCGGGGGUGUUUGUGuguuuguggagcagcaUAAAUAGCCCCGAUUUGACAGgu
..((((((.(((((((.(((((((((((((...))))).)))))))).))))))).))).))).

Structure

ac   -   U       G        -     g 
  ccU UCA GUCGGGG UGUUUGUG uguuu  
  ||| ||| ||||||| |||||||| ||||| u
  gGA AGU UAGCCCC AUAAAUac acgag  
-u   C   U       G        g     g 

Annotation confidence Not enough data

Comments

Ywo et al. named this sequences hvt-mir-8 in [1].

Genome context

Unknown

Mature hvt-miR-H16-5p

• Accession: MIMAT0012870
• Description: Herpesvirus of turkeys hvt-miR-H16-5p mature miRNA
• Sequence: 5 - UUCAUGUCGGGGGUGUUUGUG - 25
• Evidence: experimental ; Northern [1]

Mature hvt-miR-H16-3p

• Accession: MIMAT0012871
• Description: Herpesvirus of turkeys hvt-miR-H16-3p mature miRNA
• Sequence: 42 - UAAAUAGCCCCGAUUUGACAG - 62
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19403687
   Novel microRNAs (miRNAs) encoded by herpesvirus of Turkeys: evidence of miRNA evolution by duplication
   "Yao Y, Zhao Y, Smith LP, Watson M, Nair V"
   "J Virol (2009) 83:6969-6973