Stem-loop hvt-mir-H17

Accession

MI0012630

Description

Herpesvirus of turkeys hvt-mir-H17 precursor miRNA

Gene family

MIPF0000773; hvt-mir-H16

Sequence

gcccUUCACGUCGGGGGUGUUUGUGuguuugugaagcagcaUAAACAGCCCCGAUUUGACAGGU
(((..(((.(((((((.(((((((((((((...))))).)))))))).))))))).)))..)))

Structure

   cU   C       G        -     g 
gcc  UCA GUCGGGG UGUUUGUG uguuu  
|||  ||| ||||||| |||||||| ||||| u
UGG  AGU UAGCCCC ACAAAUac acgaa  
   AC   U       G        g     g 

Annotation confidence Not enough data

Comments

Ywo et al. named this sequences hvt-mir-9 in [1].

Genome context

Unknown

Mature hvt-miR-H17-5p

• Accession: MIMAT0012872
• Description: Herpesvirus of turkeys hvt-miR-H17-5p mature miRNA
• Sequence: 5 - UUCACGUCGGGGGUGUUUGUG - 25
• Evidence: experimental ; Northern [1]

Mature hvt-miR-H17-3p

• Accession: MIMAT0012873
• Description: Herpesvirus of turkeys hvt-miR-H17-3p mature miRNA
• Sequence: 42 - UAAACAGCCCCGAUUUGACAGGU - 64
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 19403687
   Novel microRNAs (miRNAs) encoded by herpesvirus of Turkeys: evidence of miRNA evolution by duplication
   "Yao Y, Zhao Y, Smith LP, Watson M, Nair V"
   "J Virol (2009) 83:6969-6973