Stem-loop hvt-mir-H18

Accession

MI0012631

Description

Herpesvirus of turkeys hvt-mir-H18 precursor miRNA

Sequence

agcccAUCAAACCGGGGGGGAUUUCAGUauguuugugaagcauCUGAGAUACGCCCGAUUUGACGAAuu
....(.(((((.((((.(..(((((((.((((((...))))))))))))).).)))).))))).)....

Structure

agcc A     C    G GG       U      g 
    c UCAAA CGGG G  AUUUCAG auguuu  
    | ||||| |||| |  ||||||| |||||| u
    G AGUUU GCCC C  UAGAGUC uacgaa  
uuAA C     A    G -A       -      g 

Annotation confidence Not enough data

Comments

Ywo et al. named this sequences hvt-mir-10 in [1].

Genome context

Unknown

Mature hvt-miR-H18-5p

• Accession: MIMAT0012874
• Description: Herpesvirus of turkeys hvt-miR-H18-5p mature miRNA
• Sequence: 6 - AUCAAACCGGGGGGGAUUUCAGU - 28
• Evidence: experimental ; cloned [1]

Mature hvt-miR-H18-3p

• Accession: MIMAT0012875
• Description: Herpesvirus of turkeys hvt-miR-H18-3p mature miRNA
• Sequence: 44 - CUGAGAUACGCCCGAUUUGACGAA - 67
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 19403687
   Novel microRNAs (miRNAs) encoded by herpesvirus of Turkeys: evidence of miRNA evolution by duplication
   "Yao Y, Zhao Y, Smith LP, Watson M, Nair V"
   "J Virol (2009) 83:6969-6973