miRBase entry: eca-mir-1839

Stem-loop eca-mir-1839


Accession
MI0012649
Description
Equus caballus eca-mir-1839 precursor miRNA
Gene family
MIPF0000702; mir-1839


Sequence

854 reads, 129 reads per million, 1 experiments
AAGGUAGAUAGAACAGGUCUUGuuugcaaaauaaauucaagaccuacuuaucuaccaaca
..(((((((((...((((((((..(.........)..))))))))..)))))))))....

Structure
--AA         AAC        uu gca 
    GGUAGAUAG   AGGUCUUG  u   a
    |||||||||   ||||||||  |   a
    ccaucuauu   uccagaac  a   a
acaa         -ca        uu aau 


Annotation confidence Not enough data
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Genome context
chr1: 91911484-91911543 [-]

Database links

Mature eca-miR-1839

Accession MIMAT0012893
Description Equus caballus eca-miR-1839 mature miRNA
Sequence 1 - AAGGUAGAUAGAACAGGUCUUG - 22
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131