miRBase entry: eca-mir-346

Stem-loop eca-mir-346


Accession
MI0012658
Description
Equus caballus eca-mir-346 precursor miRNA
Gene family
MIPF0000188; mir-346


Sequence

ggucucuguguugggcgucUGUCUGCCCGCAUGCCUGCCUCUcuguugcucugaaggaggcaggggcugggccugcagcugccugggcagagcgg
.(.((((((..((((((.((((..((((((...((((((((.((..........)))))))))).)).))))..)))).)))))).)))))))..

Structure
-g u      gu      u    CU    -  AUG        U  guug 
  g cucugu  ugggcg cUGU  GCCC GC   CCUGCCUC cu    c
  | ||||||  |||||| ||||  |||| ||   |||||||| ||     
  c gagacg  guccgu gacg  cggg cg   ggacggag ga    u
gg -      -g      c    uc    u  --g        -  aguc 


Annotation confidence Not enough data
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Genome context
chr1: 84117510-84117604 [+]

Database links

Mature eca-miR-346

Accession MIMAT0012902
Description Equus caballus eca-miR-346 mature miRNA
Sequence 20 - UGUCUGCCCGCAUGCCUGCCUCU - 42
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131