miRBase entry: eca-mir-302c

Stem-loop eca-mir-302c


Accession
MI0012669
Description
Equus caballus eca-mir-302c precursor miRNA
Gene family
MIPF0000071; mir-302

Literature search
2 open access papers mention eca-mir-302c
(2 sentences)

Sequence

ccuuugcuuuaacauggggguaccugcuguguaaagcaaaagUAAGUGCUUCCAUGUUUCAGUGGagg
((((((((..(((((((((((((.((((.(((...)))..)))).)))))))))))))..))))))))

Structure
        uu             c    -g   a 
ccuuugcu  aacauggggguac ugcu  ugu  
||||||||  ||||||||||||| ||||  ||| a
ggaGGUGA  UUGUACCUUCGUG AUga  acg  
        CU             A    aa   a 


Annotation confidence Not enough data
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Genome context
chr2: 113629201-113629268 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from eca-mir-302c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-302c

Accession MIMAT0012913
Description Equus caballus eca-miR-302c mature miRNA
Sequence 43 - UAAGUGCUUCCAUGUUUCAGUGG - 65
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131