miRBase entry: eca-mir-302d

Stem-loop eca-mir-302d


Accession
MI0012670
Description
Equus caballus eca-mir-302d precursor miRNA
Gene family
MIPF0000071; mir-302

Literature search
2 open access papers mention eca-mir-302d
(2 sentences)

Sequence

ccucuacuuuaacauggaggcacuugcugugacuugagaaaaaUAAGUGCUUCCAUGUUUUAGUGUgg
((..((((..((((((((((((((((((........)).....))))))))))))))))..)))).))

Structure
  uc    uu                -----  gug 
cc  uacu  aacauggaggcacuug     cu   a
||  ||||  ||||||||||||||||     ||    
gg  GUGA  UUGUACCUUCGUGAAU     ga   c
  -U    UU                aaaaa  guu 


Annotation confidence Not enough data
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Genome context
chr2: 113629533-113629600 [+]
Clustered miRNAs
4 other miRNAs are < 10 kb from eca-mir-302d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-302d

Accession MIMAT0012914
Description Equus caballus eca-miR-302d mature miRNA
Sequence 44 - UAAGUGCUUCCAUGUUUUAGUGU - 66
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131