miRBase entry: eca-mir-34a

Stem-loop eca-mir-34a


Accession
MI0012673
Description
Equus caballus eca-mir-34a precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
1 open access papers mention eca-mir-34a
(3 sentences)

Sequence

40 reads, 6 reads per million, 1 experiments
UGGCAGUGUCUUAGCUGGUUGUugugaguaauagugcgggaagcaaucagcaaguauacugcc
.(((((((((((.((((((((((....(((....)))....))))))))))))).))))))))

Structure
U        -   A          guga   a 
 GGCAGUGU CUU GCUGGUUGUu    gua u
 |||||||| ||| ||||||||||    |||  
 ccgucaua gaa cgacuaacga    cgu a
-        u   -          aggg   g 


Annotation confidence Not enough data
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Genome context
chr2: 41934533-41934595 [+]

Database links

Mature eca-miR-34a

Accession MIMAT0012917
Description Equus caballus eca-miR-34a mature miRNA
Sequence 1 - UGGCAGUGUCUUAGCUGGUUGU - 22
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131