Stem-loop eca-mir-138-1

Accession

MI0012681

Description

Equus caballus eca-mir-138-1 precursor miRNA

Gene family

MIPF0000075; mir-138

Literature search

1 open access papers mention eca-mir-138-1
(2 sentences)

Sequence

14 reads, 2 reads per million, 1 experiments

cguugcugcAGCUGGUGUUGUGAAUCAGGCCGacgagcagugcauccucuuacccggcuauuucacgacaccaggguugcauca
.(.(((.((..(((((((((((((...(((((..(((.((......)))))...)))))..))))))))))))).)).))).).

Structure

c u   u  AG             UCA     -ac   c  ug 
 g ugc gc  CUGGUGUUGUGAA   GGCCG   gag ag  c
 | ||| ||  |||||||||||||   |||||   ||| ||   
 c acg ug  gaccacagcacuu   ucggc   uuc uc  a
a u   u  -g             -ua     cca   -  cu 

Annotation confidence Not enough data

Genome context

chr3: 9201079-9201162 [+]

Mature eca-miR-138

• Accession: MIMAT0012925
• Description: Equus caballus eca-miR-138 mature miRNA
• Sequence: 10 - AGCUGGUGUUGUGAAUCAGGCCG - 32
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131