miRBase entry: eca-mir-182

Stem-loop eca-mir-182


Accession
MI0012691
Description
Equus caballus eca-mir-182 precursor miRNA
Gene family
MIPF0000116; mir-182


Sequence

519 reads, 79 reads per million, 1 experiments
accauuUUUGGCAAUGGUAGAACUCACACUGgugagguaaugggauccggugguucuagacuugccaacuauggu
(((((..(((((((...((((((...((((((..............))))))))))))...)))))))..)))))

Structure
     uU       UGG      UCA      ugaggu 
accau  UUGGCAA   UAGAAC   CACUGg      a
|||||  |||||||   ||||||   ||||||       
uggua  aaccguu   aucuug   guggcc      a
     uc       cag      ---      uagggu 


Annotation confidence Not enough data
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Genome context
chr4: 84467059-84467133 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-182
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-182

Accession MIMAT0012937
Description Equus caballus eca-miR-182 mature miRNA
Sequence 7 - UUUGGCAAUGGUAGAACUCACACUG - 31
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131