miRBase entry: eca-mir-29a

Stem-loop eca-mir-29a


Accession
MI0012694
Description
Equus caballus eca-mir-29a precursor miRNA
Gene family
MIPF0000009; mir-29

Literature search
3 open access papers mention eca-mir-29a
(5 sentences)

Sequence

2231 reads, 338 reads per million, 1 experiments
gaugacugauuucuuuugguguucagagucaauauaauuuucUAGCACCAUCUGAAAUCGGUUAu
.((((((((((((...(((((((.((((...........)))))))))))...))))))))))))

Structure
g            uuu       c    ucaa 
 augacugauuuc   ugguguu agag    u
 ||||||||||||   ||||||| ||||    a
 uAUUGGCUAAAG   ACCACGA Ucuu    u
-            UCU       -    uuaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 85326728-85326792 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-29a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-29a

Accession MIMAT0012940
Description Equus caballus eca-miR-29a mature miRNA
Sequence 43 - UAGCACCAUCUGAAAUCGGUUA - 64
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131