Stem-loop eca-mir-29b

Accession

MI0012695

Description

Equus caballus eca-mir-29b precursor miRNA

Gene family

MIPF0000009; mir-29

Literature search

2 open access papers mention eca-mir-29b
(9 sentences)

Sequence

89 reads, 13 reads per million, 1 experiments

cuucaggaagcugguuucauauggugguuuagauuuaaauagugauugucUAGCACCAUUUGAAAUCAGUGUUcuuggggg
(((((((((((((((((((.((((((..((((((.............)))))))))))).)))))))))).))))))))).

Structure

-         -          u      gu      uuaaa 
 cuucaggaa gcugguuuca auggug  uuagau     u
 ||||||||| |||||||||| ||||||  ||||||     a
 gggguucUU UGACUAAAGU UACCAC  GAUcug     g
g         G          U      --      uuagu 

Annotation confidence Not enough data

Genome context

chr4: 85327107-85327187 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-29b

Mature eca-miR-29b

• Accession: MIMAT0012941
• Description: Equus caballus eca-miR-29b mature miRNA
• Sequence: 51 - UAGCACCAUUUGAAAUCAGUGUU - 73
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131