miRBase entry: eca-mir-1905b

Stem-loop eca-mir-1905b


Accession
MI0012709
Description
Equus caballus eca-mir-1905b precursor miRNA
Gene family
MIPF0000753; mir-1905


Sequence

cugcugcuggaugcgcuugaugguugcccccuuggggcccacCACCAGCCCCACUACGCGGUAG
((((((((((.((.(((.(.((((.(((((...)))))..))))).)))..))))).)))))))

Structure
       -   a  -c   u a    -u     c 
cugcugc ugg ug  gcu g uggu  gcccc  
||||||| ||| ||  ||| | ||||  ||||| u
GAUGGCG AUC AC  CGA C ACca  cgggg  
       C   -  CC   C -    cc     u 


Annotation confidence Not enough data
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Genome context
chr5: 42088659-42088722 [-]

Database links

Mature eca-miR-1905b

Accession MIMAT0012957
Description Equus caballus eca-miR-1905b mature miRNA
Sequence 43 - CACCAGCCCCACUACGCGGUAG - 64
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131