Stem-loop eca-mir-197

Accession

MI0012711

Description

Equus caballus eca-mir-197 precursor miRNA

Gene family

MIPF0000123; mir-197

Literature search

1 open access papers mention eca-mir-197
(3 sentences)

Sequence

225 reads, 34 reads per million, 1 experiments

ggcugugccggguagagagggcagugggagguaagagcucuucacccUUCACCACCUUCUCCACCCAGCauggcc
((((((((.((((.(((((((..(((((.((((((....))).))).)))))..))))))).)))).))))))))

Structure

        c    a       ca     a   -   a 
ggcugugc gggu gagaggg  guggg ggu aag g
|||||||| |||| |||||||  ||||| ||| |||  
ccgguaCG CCCA CUCUUCC  CACUU cca uuc c
        A    C       AC     c   c   u 

Annotation confidence Not enough data

Genome context

chr5: 58536553-58536627 [-]

Mature eca-miR-197

• Accession: MIMAT0012959
• Description: Equus caballus eca-miR-197 mature miRNA
• Sequence: 48 - UUCACCACCUUCUCCACCCAGC - 69
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131