Stem-loop eca-mir-199a

Accession

MI0012712

Description

Equus caballus eca-mir-199a precursor miRNA

Gene family

MIPF0000040; mir-199

Literature search

2 open access papers mention eca-mir-199a
(5 sentences)

Sequence

56014 reads, 8479 reads per million, 1 experiments

gcuccgucgcCCCAGUGUUCAGACUACCUGUUCaggacaaugccguuguACAGUAGUCUGCACAUUGGUUAgacugggc
((((.(((...(((((((.((((((((.(((.((((......))..)).))))))))))).)))))))...))).))))

Structure

    c   gcC       U        C   U  --  ac 
gcuc guc   CCAGUGU CAGACUAC UGU Ca  gg  a
|||| |||   ||||||| |||||||| ||| ||  ||   
cggg cag   GGUUACA GUCUGAUG ACA gu  cc  a
    u   AUU       C        -   u  ug  gu 

Annotation confidence High

Genome context

chr5: 8104732-8104810 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-199a

Mature eca-miR-199a-5p

• Accession: MIMAT0012960
• Description: Equus caballus eca-miR-199a-5p mature miRNA
• Sequence: 11 - CCCAGUGUUCAGACUACCUGUUC - 33
• Evidence: not_experimental

Mature eca-miR-199a-3p

• Accession: MIMAT0012961
• Description: Equus caballus eca-miR-199a-3p mature miRNA
• Sequence: 50 - ACAGUAGUCUGCACAUUGGUUA - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131