Stem-loop eca-mir-488

Accession

MI0012718

Description

Equus caballus eca-mir-488 precursor miRNA

Gene family

MIPF0000318; mir-488

Sequence

47 reads, 7 reads per million, 1 experiments

gagaaucaucucucccagauaauggcacucucaaacaaguuuccaaguuguUUGAAAGGCUAUUUCUUGGUCagaagacucuc
((((.((.(((..((.(((.((((((.((.((((((((.((...)).)))))))).))))))))))).))..))).)).))))

Structure

    a  a   cu  c   u      a  c        g  u 
gaga uc ucu  cc aga aauggc cu ucaaacaa uu  
|||| || |||  || ||| |||||| || |||||||| || c
cucu ag aga  GG UCU UUAUCG GA AGUUuguu aa  
    c  a   CU  U   -      -  A        g  c 

Annotation confidence Not enough data

Genome context

chr5: 12172407-12172489 [-]

Mature eca-miR-488

• Accession: MIMAT0012965
• Description: Equus caballus eca-miR-488 mature miRNA
• Sequence: 52 - UUGAAAGGCUAUUUCUUGGUC - 72
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131