miRBase entry: eca-mir-141

Stem-loop eca-mir-141


Accession
MI0012723
Description
Equus caballus eca-mir-141 precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

17 reads, 3 reads per million, 1 experiments
ggguccaucuuccaguacaguguuggauggucuaauugugaagcuccUAACACUGUCUGGUAAAGAUGGccc
(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..))))))))))

Structure
   u       --    u        -   ugg  ua 
ggg ccaucuu  ccag acaguguu gga   uc  a
||| |||||||  |||| |||||||| |||   ||  u
ccc GGUAGAA  GGUC UGUCACAA ccu   ag  u
   -       AU    -        U   cga  ug 


Annotation confidence Not enough data
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Genome context
chr6: 34423490-34423561 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-141
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-141

Accession MIMAT0012970
Description Equus caballus eca-miR-141 mature miRNA
Sequence 48 - UAACACUGUCUGGUAAAGAUGG - 69
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131