miRBase entry: eca-mir-149

Stem-loop eca-mir-149


Accession
MI0012725
Description
Equus caballus eca-mir-149 precursor miRNA
Gene family
MIPF0000274; mir-149


Sequence

104 reads, 16 reads per million, 1 experiments
gccggcgcccaggcUCUGGCUCCGUGUCUUCACUCCCguguguguccgaggagggagggagggacgggggcugugcuggggcugccgga
.(((((((((.(((.(.(.((((((.(((((.(((((.(.(.......).).)))))))))).)))))).).).))).)))).))))).

Structure
g     -    a   U U G      G     A     g g gu 
 ccggc gccc ggc C G CUCCGU UCUUC CUCCC u u  g
 ||||| |||| ||| | | |||||| ||||| ||||| | |  u
 ggccg cggg ucg g c ggggca ggagg gaggg g a  c
a     u    g   u u g      g     -     a g gc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 25975930-25976018 [+]

Database links

Mature eca-miR-149

Accession MIMAT0012973
Description Equus caballus eca-miR-149 mature miRNA
Sequence 15 - UCUGGCUCCGUGUCUUCACUCCC - 37
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131