Stem-loop eca-mir-200c

Accession

MI0012727

Description

Equus caballus eca-mir-200c precursor miRNA

Gene family

MIPF0000019; mir-8

Literature search

4 open access papers mention eca-mir-200c
(11 sentences)

Sequence

2 reads, 0 reads per million, 1 experiments

ccgucuuacccagcaguguuugggugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGA
(((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))).

Structure

-     -      a        u   u   gg 
 ccguc uuaccc gcaguguu ggg gcu  u
 ||||| |||||| |||||||| ||| |||  u
 GGUAG AAUGGG CGUCAUAA cuc uga  g
A     U      C        U   -   gg 

Annotation confidence Not enough data

Genome context

chr6: 34423081-34423144 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from eca-mir-200c

Mature eca-miR-200c

• Accession: MIMAT0012974
• Description: Equus caballus eca-miR-200c mature miRNA
• Sequence: 42 - UAAUACUGCCGGGUAAUGAUGGA - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131