miRBase entry: eca-mir-125b

Stem-loop eca-mir-125b


Accession
MI0012733
Description
Equus caballus eca-mir-125b precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
1 open access papers mention eca-mir-125b
(2 sentences)

Sequence

15873 reads, 2403 reads per million, 1 experiments
ugcgcuccucucaaUCCCUGAGACCCUAACUUGUGAuguuuaccguuuaaauccacggguuaggcucuugggagcugcgagucgugcc
.((((..(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).)))..)))).

Structure
u    uc   u  -a    U    C           Au     c 
 gcgc  cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
 ||||  ||| ||  |||| |||| |||||||||||  ||||| g
 cgug  gag gu  aggg uucu ggauugggcac  uaaau u
c    cu   c  cg    -    c           -c     u 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr7: 29499965-29500052 [-]

Database links

Mature eca-miR-125b-5p

Accession MIMAT0012981
Description Equus caballus eca-miR-125b-5p mature miRNA
Sequence 15 - UCCCUGAGACCCUAACUUGUGA - 36
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131