miRBase entry: eca-mir-23a

Stem-loop eca-mir-23a


Accession
MI0012737
Description
Equus caballus eca-mir-23a precursor miRNA
Gene family
MIPF0000027; mir-23


Sequence

1268 reads, 192 reads per million, 1 experiments
ggccggcugggguuccuggggaugggauuugcugcuugucacaaAUCACAUUGCCAGGGAUUUCCaaccgacc
((.(((.((((((((((((.((((.((((((.((.....)))))))).)))).))))))).))))).))).))

Structure
  c   c     -       g    g      c  c 
gg cgg ugggg uuccugg gaug gauuug ug u
|| ||| ||||| ||||||| |||| |||||| || u
cc gcc aCCUU AGGGACC UUAC CUAaac ac g
  a   a     U       G    A      -  u 


Annotation confidence Not enough data
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Genome context
chr7: 44929817-44929889 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from eca-mir-23a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-23a

Accession MIMAT0012986
Description Equus caballus eca-miR-23a mature miRNA
Sequence 45 - AUCACAUUGCCAGGGAUUUCC - 65
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131