miRBase entry: eca-mir-27a

Stem-loop eca-mir-27a


Accession
MI0012739
Description
Equus caballus eca-mir-27a precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
2 open access papers mention eca-mir-27a
(2 sentences)

Sequence

1983 reads, 300 reads per million, 1 experiments
cuggggagcagggcuuagcugcuugugagcaggguccacaccgagucaugUUCACAGUGGCUAAGUUCCGCcccccg
..((((.((.(((((((((((((.(((((((((.((......)).)).)))))))))))))))))))).)).)))).

Structure
cu    a  a             u       -  g  ca 
  gggg gc gggcuuagcugcu gugagca gg uc  c
  |||| || ||||||||||||| ||||||| || ||   
  cccc CG CUUGAAUCGGUGA CACUUgu cu ag  a
-g    c  C             -       a  g  cc 


Annotation confidence Not enough data
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Genome context
chr7: 44930014-44930090 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from eca-mir-27a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-27a

Accession MIMAT0012988
Description Equus caballus eca-miR-27a mature miRNA
Sequence 51 - UUCACAGUGGCUAAGUUCCGC - 71
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131