miRBase entry: eca-mir-34b

Stem-loop eca-mir-34b


Accession
MI0012741
Description
Equus caballus eca-mir-34b precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
1 open access papers mention eca-mir-34b
(2 sentences)

Sequence

1490 reads, 225 reads per million, 1 experiments
gugcucgguuuguAGGCAGUGUAAUUAGCUGAUUGUacucuggagcuuacAAUCACUAACUCCACUGCCAUCaaaacaaggcac
(((((..((((...(((((((...((((.((((((((..........))))))))))))...)))))))....))))..)))))

Structure
     cg    -guA       UAA    C        cucu 
gugcu  guuu    GGCAGUG   UUAG UGAUUGUa    g
|||||  ||||    |||||||   |||| ||||||||     
cacgg  caaa    CCGUCAC   AAUC ACUAAcau    g
     aa    aCUA       CUC    -        ucga 


Annotation confidence High
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Genome context
chr7: 20101138-20101221 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-34b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-34b-5p

Accession MIMAT0012990
Description Equus caballus eca-miR-34b-5p mature miRNA
Sequence 14 - AGGCAGUGUAAUUAGCUGAUUGU - 36
Evidence not_experimental

Mature eca-miR-34b-3p

Accession MIMAT0012991
Description Equus caballus eca-miR-34b-3p mature miRNA
Sequence 51 - AAUCACUAACUCCACUGCCAUC - 72
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131