miRBase entry: eca-mir-34c

Stem-loop eca-mir-34c


Accession
MI0012742
Description
Equus caballus eca-mir-34c precursor miRNA
Gene family
MIPF0000039; mir-34

Literature search
1 open access papers mention eca-mir-34c
(2 sentences)

Sequence

23651 reads, 3580 reads per million, 1 experiments
agucuaguuacuAGGCAGUGUAGUUAGCUGAUUGCuaauaauaccaaucacuaaccacacggccagguaaaaagauu
.((((..(((((.(((.((((.(((((.((((((.((....)).))))))))))).)))).))).)))))..)))).

Structure
a    ag     A   A    A     C      C  a 
 gucu  uuacu GGC GUGU GUUAG UGAUUG ua u
 ||||  ||||| ||| |||| ||||| |||||| ||  
 uaga  aaugg ccg caca caauc acuaac au a
u    aa     a   g    c     -      c  a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr7: 20101717-20101793 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-34c

Accession MIMAT0012992
Description Equus caballus eca-miR-34c mature miRNA
Sequence 13 - AGGCAGUGUAGUUAGCUGAUUGC - 35
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131