miRBase entry: eca-mir-195

Stem-loop eca-mir-195


Accession
MI0012774
Description
Equus caballus eca-mir-195 precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
1 open access papers mention eca-mir-195
(6 sentences)

Sequence

5170 reads, 783 reads per million, 1 experiments
acacccagcuccccuggcucUAGCAGCACAGAAAUAUUGGCacugggaagagagucugccaauauuggcugugcugcuccaggcagggugguga
.((((......(((((.((..((((((((((.((((((((((((........)))..)))))))))..))))))))))..)).))))).)))).

Structure
a    cagcuc     g  cU          -A         --   ggg 
 cacc      cccug cu  AGCAGCACAG  AAUAUUGGC  acu   a
 ||||      ||||| ||  ||||||||||  |||||||||  |||    
 gugg      gggac ga  ucgucguguc  uuauaaccg  uga   a
a    -----u     g  cc          gg         uc   gag 


Annotation confidence High
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Genome context
chr11: 50048869-50048962 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-195
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-195

Accession MIMAT0013027
Description Equus caballus eca-miR-195 mature miRNA
Sequence 21 - UAGCAGCACAGAAAUAUUGGC - 41
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131