miRBase entry: eca-mir-454

Stem-loop eca-mir-454


Accession
MI0012786
Description
Equus caballus eca-mir-454 precursor miRNA
Gene family
MIPF0000174; mir-454

Literature search
1 open access papers mention eca-mir-454
(4 sentences)

Sequence

119 reads, 18 reads per million, 1 experiments
agaacccuaucgauauugucucugcuguguaaaucgcucugagUAGUGCAAUAUUGCUUAUAGGGUuuu
.((((((((((((((((((..((((((((.....)))....))))).)))))))))...))))))))).

Structure
a         ---         cu     ----   u 
 gaacccuau   cgauauugu  cugcu    gug a
 |||||||||   |||||||||  |||||    ||| a
 uuUGGGAUA   GUUAUAACG  GAUga    cgc a
u         UUC         -U     gucu   u 


Annotation confidence Not enough data
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Genome context
chr11: 33283292-33283360 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-454
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-454

Accession MIMAT0013042
Description Equus caballus eca-miR-454 mature miRNA
Sequence 44 - UAGUGCAAUAUUGCUUAUAGGGU - 66
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131