miRBase entry: eca-mir-194-1

Stem-loop eca-mir-194-1


Accession
MI0012793
Description
Equus caballus eca-mir-194-1 precursor miRNA
Gene family
MIPF0000055; mir-194

Literature search
1 open access papers mention eca-mir-194-1
(1 sentences)

Sequence

19 reads, 3 reads per million, 1 experiments
gggcucccacccccUGUAACAGCAACUCCAUGUGGAagugcccacugguuccaguggggcugcuguuaucuggggcgggggccag
.(((((((.((((..(((((((((.((((((.((((...(((....))))))))))))).)))))))))..)))).)))))))..

Structure
-g       a    cU         A      G    agu   c 
  ggcuccc cccc  GUAACAGCA CUCCAU UGGA   gcc a
  ||||||| ||||  ||||||||| |||||| ||||   |||  
  ccggggg gggg  uauugucgu ggggug accu   ugg c
ga       c    uc         c      -    ---   u 


Annotation confidence Not enough data
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Genome context
chr12: 25044429-25044513 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-194-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-194

Accession MIMAT0013050
Description Equus caballus eca-miR-194 mature miRNA
Sequence 15 - UGUAACAGCAACUCCAUGUGGA - 36
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131