miRBase entry: eca-mir-1842

Stem-loop eca-mir-1842


Accession
MI0012799
Description
Equus caballus eca-mir-1842 precursor miRNA
Gene family
MIPF0000788; mir-1842


Sequence

29 reads, 4 reads per million, 1 experiments
UGGCUCUGUGAGGUCGGCUCAaggugggucuggauauugagcaggccugucagggcguug
..((((((..(((((.((((((.((........)).)))))).)))))..))))))....

Structure
--UG      UG     G      g  ggg 
    GCUCUG  AGGUC GCUCAa gu   u
    ||||||  ||||| |||||| ||    
    cgggac  uccgg cgaguu ua   c
guug      ug     a      a  ggu 


Annotation confidence Not enough data
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Genome context
chr13: 40597869-40597928 [+]

Database links

Mature eca-miR-1842

Accession MIMAT0013055
Description Equus caballus eca-miR-1842 mature miRNA
Sequence 1 - UGGCUCUGUGAGGUCGGCUCA - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131

  2. PubMed ID: 24692655
    Large numbers of novel miRNAs originate from DNA transposons and are coincident with a large species radiation in bats
    "Platt RN 2nd, Vandewege MW, Kern C, Schmidt CJ, Hoffmann FG, Ray DA"
    "Mol Biol Evol (2014) 31:1536-1545