Stem-loop eca-mir-25

Accession

MI0012801

Description

Equus caballus eca-mir-25 precursor miRNA

Gene family

MIPF0000013; mir-25

Literature search

1 open access papers mention eca-mir-25
(1 sentences)

Sequence

7352 reads, 1113 reads per million, 1 experiments

ggccaguguugagaggcggagacuugggcaauugcuggacgcugcccugggCAUUGCACUUGUCUCGGUCUGAcagugccggcc
((((.((((((..((((.(((((..(.(((((..((((........))))..))))).)..))))).))))..)))))).))))

Structure

    a      ag    g     uu g     ug    acg 
ggcc guguug  aggc gagac  g gcaau  cugg   c
|||| ||||||  |||| |||||  | |||||  ||||    
ccgg cgugac  UCUG CUCUG  C CGUUA  gguc   u
    c      AG    G     UU A     Cg    ccg 

Annotation confidence Not enough data

Genome context

chr13: 8034246-8034329 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from eca-mir-25

Mature eca-miR-25

• Accession: MIMAT0013057
• Description: Equus caballus eca-miR-25 mature miRNA
• Sequence: 52 - CAUUGCACUUGUCUCGGUCUGA - 73
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131