miRBase entry: eca-mir-340

Stem-loop eca-mir-340


Accession
MI0012811
Description
Equus caballus eca-mir-340 precursor miRNA
Gene family
MIPF0000191; mir-340


Sequence

6144 reads, 930 reads per million, 1 experiments
ggUUAUAAAGCAAUGAGACUGAUUgucaugugucgcuugugggaUCCGUCUCAGUUACUUUAUAGCC
((((((((((...((((((.((((.(((((.......))))))))).))))))....))))))))))

Structure
          -CAA      U    g     ug 
ggUUAUAAAG    UGAGAC GAUU ucaug  u
||||||||||    |||||| |||| |||||  c
CCGAUAUUUC    ACUCUG CUag ggugu  g
          AUUG      C    -     uc 


Annotation confidence High
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Genome context
chr14: 2525731-2525797 [+]

Database links

Mature eca-miR-340-5p

Accession MIMAT0013066
Description Equus caballus eca-miR-340-5p mature miRNA
Sequence 3 - UUAUAAAGCAAUGAGACUGAUU - 24
Evidence not_experimental

Mature eca-miR-340-3p

Accession MIMAT0013067
Description Equus caballus eca-miR-340-3p mature miRNA
Sequence 45 - UCCGUCUCAGUUACUUUAUAGCC - 67
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131