miRBase entry: eca-mir-874

Stem-loop eca-mir-874


Accession
MI0012813
Description
Equus caballus eca-mir-874 precursor miRNA
Gene family
MIPF0000401; mir-874

Literature search
1 open access papers mention eca-mir-874
(1 sentences)

Sequence

156 reads, 24 reads per million, 1 experiments
gcggccccacgcaccaggguaagagagacucucgcuucCUGCCCUGGCCCGAGGGACCGA
.(((.(((.((..((((((((((.(((...))).))...))))))))..)).))).))).

Structure
g   c   a  ca        ---  a   a 
 cgg ccc cg  ccagggua   ag gag  
 ||| ||| ||  ||||||||   || ||| c
 GCC GGG GC  GGUCCCGU   uc cuc  
A   A   A  CC        Ccu  g   u 


Annotation confidence High
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Genome context
chr14: 38723804-38723863 [+]

Database links

Mature eca-miR-874

Accession MIMAT0013069
Description Equus caballus eca-miR-874 mature miRNA
Sequence 39 - CUGCCCUGGCCCGAGGGACCGA - 60
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131