Stem-loop eca-mir-885

Accession

MI0012828

Description

Equus caballus eca-mir-885 precursor miRNA

Gene family

MIPF0000532; mir-885

Sequence

ccgcgcucucUCCAUUACACUACCCUGCCUCUucuccaugagAGGCAGCGGGGUGUAGUGGAUAgagcacgggu
(((.(((((.(((((((((((.(((((((((((......))))))))).))))))))))))).))))).)))..

Structure

--   c     c           A  -         cu 
  ccg gcucu UCCAUUACACU CC CUGCCUCUu  c
  ||| ||||| ||||||||||| || |||||||||   
  ggc cgagA AGGUGAUGUGG GG GACGGAgag  c
ug   a     U           -  C         ua 

Annotation confidence Not enough data

Genome context

chr16: 6595298-6595371 [+]

Mature eca-miR-885-5p

• Accession: MIMAT0013081
• Description: Equus caballus eca-miR-885-5p mature miRNA
• Sequence: 11 - UCCAUUACACUACCCUGCCUCU - 32
• Evidence: not_experimental

Mature eca-miR-885-3p

• Accession: MIMAT0013082
• Description: Equus caballus eca-miR-885-3p mature miRNA
• Sequence: 43 - AGGCAGCGGGGUGUAGUGGAUA - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131