miRBase entry: eca-mir-15a

Stem-loop eca-mir-15a


Accession
MI0012829
Description
Equus caballus eca-mir-15a precursor miRNA
Gene family
MIPF0000006; mir-15

Literature search
2 open access papers mention eca-mir-15a
(12 sentences)

Sequence

890 reads, 135 reads per million, 1 experiments
UAGCAGCACAUAAUGGUUUGUGgauuuugaaaaggugcaggccauauugugcugccu
..((((((((..((((((((((.............))))))))))..))))))))..

Structure
UA        UA          gauuu 
  GCAGCACA  AUGGUUUGUG     u
  ||||||||  ||||||||||     g
  cgucgugu  uaccggacgu     a
uc        ua          ggaaa 


Annotation confidence Not enough data
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Genome context
chr17: 21138783-21138839 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-mir-15a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-15a

Accession MIMAT0013083
Description Equus caballus eca-miR-15a mature miRNA
Sequence 1 - UAGCAGCACAUAAUGGUUUGUG - 22
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131