Stem-loop eca-mir-19a

Accession

MI0012833

Description

Equus caballus eca-mir-19a precursor miRNA

Gene family

MIPF0000011; mir-19

Literature search

2 open access papers mention eca-mir-19a
(3 sentences)

Sequence

113 reads, 17 reads per million, 1 experiments

gcagucuucuguuaguuuugcauaguugcacuacaagaagaauguaguUGUGCAAAUCUAUGCAAAACUGAugguggccugc
((((.((.(((((((((((((((((((((((((((.......))))...))))))..))))))))))))))))).)).))))

Structure

    u  u                 --      ---    ag 
gcag cu cuguuaguuuugcauag  uugcac   uaca  a
|||| || |||||||||||||||||  ||||||   ||||  a
cguc gg gguAGUCAAAACGUAUC  AACGUG   augu  g
    c  u                 UA      Uug    aa 

Annotation confidence Not enough data

Genome context

chr17: 61792692-61792773 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from eca-mir-19a

Mature eca-miR-19a

• Accession: MIMAT0013086
• Description: Equus caballus eca-miR-19a mature miRNA
• Sequence: 49 - UGUGCAAAUCUAUGCAAAACUGA - 71
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131