Stem-loop eca-mir-28

Accession

MI0012840

Description

Equus caballus eca-mir-28 precursor miRNA

Literature search

2 open access papers mention eca-mir-28
(2 sentences)

Sequence

17625 reads, 2668 reads per million, 1 experiments

gguccuugcccucAAGGAGCUCACAGUCUAUUGAGuugccuuucugacuuuccCACUAGAUUGUGAGCUCCUGGAgggcaggcacu
(((.(((((((((.((((((((((((((((.((((((........))))....)).)))))))))))))))).))))))))).)))

Structure

   c         A                U  ----    gcc 
ggu cuugcccuc AGGAGCUCACAGUCUA UG    AGuu   u
||| ||||||||| |||||||||||||||| ||    ||||    
uca ggacgggAG UCCUCGAGUGUUAGAU AC    ucag   u
   c         G                C  ccuu    ucu 

Annotation confidence Medium

Genome context

chr19: 26408746-26408831 [+]

Mature eca-miR-28-5p

• Accession: MIMAT0013092
• Description: Equus caballus eca-miR-28-5p mature miRNA
• Sequence: 14 - AAGGAGCUCACAGUCUAUUGAG - 35
• Evidence: not_experimental

Mature eca-miR-28-3p

• Accession: MIMAT0013093
• Description: Equus caballus eca-miR-28-3p mature miRNA
• Sequence: 54 - CACUAGAUUGUGAGCUCCUGGA - 75
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131