miRBase entry: eca-let-7d

Stem-loop eca-let-7d


Accession
MI0012859
Description
Equus caballus eca-let-7d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
5 open access papers mention eca-let-7d
(17 sentences)

Sequence

2771 reads, 419 reads per million, 1 experiments
ccuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcccacaaggagauaacuauacgaccugcugccuuucuuagg
(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))

Structure
       A              C      -------uua      g 
ccuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
||||||| |||||||||||||| ||||||          |||||| a
ggauucu uuccgucguccagc uaucaa          cccguu u
       -              a      uagaggaaca      u 


Annotation confidence High
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Genome context
chr23: 54148818-54148904 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from eca-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-let-7d

Accession MIMAT0013110
Description Equus caballus eca-let-7d mature miRNA
Sequence 8 - AGAGGUAGUAGGUUGCAUAGUU - 29
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131