miRBase entry: eca-mir-27b

Stem-loop eca-mir-27b


Accession
MI0012865
Description
Equus caballus eca-mir-27b precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
2 open access papers mention eca-mir-27b
(3 sentences)

Sequence

66183 reads, 10018 reads per million, 1 experiments
aggugcagagcuuagcugauuggugaacagugacugguuuccgcuuugUUCACAGUGGCUAAGUUCUGCaccu
(((((((((((((((((.((((.(((((((....(((...)))..))))))))))))))))))))))))))))

Structure
                 g    g       ugac   u 
aggugcagagcuuagcu auug ugaacag    ugg  
||||||||||||||||| |||| |||||||    ||| u
uccaCGUCUUGAAUCGG UGAC ACUUguu    gcc  
                 -    -       --uc   u 


Annotation confidence High
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Genome context
chr23: 2317696-2317768 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from eca-mir-27b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-27b

Accession MIMAT0013114
Description Equus caballus eca-miR-27b mature miRNA
Sequence 49 - UUCACAGUGGCUAAGUUCUGC - 69
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131