miRBase entry: eca-mir-1193

Stem-loop eca-mir-1193


Accession
MI0012874
Description
Equus caballus eca-mir-1193 precursor miRNA
Gene family
MIPF0000714; mir-1193


Sequence

10 reads, 2 reads per million, 1 experiments
ugaagggacuguagugccauccacucugcaggguagcugaggggaugguagaccggugacgugcacuucauuuaugaugUAGGUCACCCGUUUGACUAUCcaucagcacccaguccaucug
.((..(((((((((.(.......).)))).((((.(((((..(((((((((((.((((((.((((..(((....))))))).)))))).)))).))))))).)))))))))))))).))..

Structure
-u  ag     guagugccauccacucugca    a     gg       -    c      g    cu   u 
  ga  ggacu                    gggu gcuga  ggauggu agac ggugac ugca  uca u
  ||  |||||                    |||| |||||  ||||||| |||| |||||| ||||  |||  
  cu  ccuga                    ccca cgacu  cCUAUCA UUUG CCACUG AUgu  agu u
gu  -a     --------------------    -     -a       G    C      G    --   a 


Annotation confidence Not enough data
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Genome context
chr24: 42902577-42902697 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from eca-mir-1193
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-1193

Accession MIMAT0013124
Description Equus caballus eca-miR-1193 mature miRNA
Sequence 80 - UAGGUCACCCGUUUGACUAUC - 100
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131