Stem-loop sequence eca-mir-1193

Accession MI0012874
Description Equus caballus miR-1193 stem-loop
Gene family MIPF0000714; mir-1193
Stem-loop 
ugaagggacuguagugccauccacucugca    a     gg       -    c      g    cu   u 
                              gggu gcuga  ggauggu agac ggugac ugca  uca u
                              |||| |||||  ||||||| |||| |||||| ||||  |||  
                              ccca cgacu  ccuauca uuug ccacug augu  agu u
--------------------gucuaccuga    -     -a       g    c      g    --   a
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Genome context
Coordinates (EquCab2) Overlapping transcripts
24: 42902577-42902697 [+]
intergenic
Clustered miRNAs
< 10kb from eca-mir-1193
eca-mir-379 24: 42894643-42894709 [+]
eca-mir-411 24: 42895895-42895976 [+]
eca-mir-299 24: 42896363-42896425 [+]
eca-mir-380 24: 42897592-42897652 [+]
eca-mir-1197 24: 42898113-42898232 [+]
eca-mir-323 24: 42898304-42898389 [+]
eca-mir-758 24: 42898599-42898683 [+]
eca-mir-329 24: 42899352-42899449 [+]
eca-mir-494 24: 42902171-42902251 [+]
eca-mir-1193 24: 42902577-42902697 [+]
eca-mir-543 24: 42904247-42904318 [+]
eca-mir-495 24: 42906084-42906165 [+]
eca-mir-376c 24: 42911104-42911169 [+]
eca-mir-376b 24: 42911856-42911937 [+]
eca-mir-376a 24: 42912234-42912301 [+]
Database links

Mature sequence eca-miR-1193

Accession MIMAT0013124
Sequence

80 -  

uaggucacccguuugacuauc

 - 100

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Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).