Stem-loop eca-mir-134

Accession

MI0012877

Description

Equus caballus eca-mir-134 precursor miRNA

Gene family

MIPF0000112; mir-134

Literature search

1 open access papers mention eca-mir-134
(1 sentences)

Sequence

86 reads, 13 reads per million, 1 experiments

agggugUGUGACUGGUUGACCAGAGGGGcaagcacucuguucacccugugggccaccuagucaccaacccu
(((((..((((((((.((.(((.((((...((((...))))..)))).)))..)).))))))))..)))))

Structure

     gU        U  -A   G    Gca    c 
agggu  GUGACUGG UG  CCA AGGG   agca  
|||||  |||||||| ||  ||| ||||   |||| u
uccca  cacugauc ac  ggu uccc   uugu  
     ac        c  cg   g    -ac    c 

Annotation confidence Not enough data

Genome context

chr24: 42925245-42925315 [+]

Clustered miRNAs

15 other miRNAs are < 10 kb from eca-mir-134

Mature eca-miR-134

• Accession: MIMAT0013127
• Description: Equus caballus eca-miR-134 mature miRNA
• Sequence: 7 - UGUGACUGGUUGACCAGAGGGG - 28
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131