Stem-loop eca-mir-154a

Accession

MI0012879

Description

Equus caballus eca-mir-154a precursor miRNA

Gene family

MIPF0000018; mir-154

Literature search

1 open access papers mention eca-mir-154a
(2 sentences)

Sequence

41 reads, 6 reads per million, 1 experiments

agaUAGGUUAUCCGUGUUGCCUUCGcuuuaucugugacgaaucauacacgguucaccuauuuuu
.(((((((...((((((((.(.((((.......)))).)...)).))))))...)))))))...

Structure

--a       UAU      -  --C U    uu 
   gaUAGGU   CCGUGU UG   C UCGc  u
   |||||||   |||||| ||   | ||||  a
   uuaucca   ggcaca ac   g agug  u
uuu       cuu      u  uaa c    uc 

Annotation confidence Not enough data

Genome context

chr24: 42930163-42930226 [+]

Clustered miRNAs

14 other miRNAs are < 10 kb from eca-mir-154a

Mature eca-miR-154a

• Accession: MIMAT0013129
• Description: Equus caballus eca-miR-154a mature miRNA
• Sequence: 4 - UAGGUUAUCCGUGUUGCCUUCG - 25
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131