miRBase entry: eca-mir-376c

Stem-loop eca-mir-376c


Accession
MI0012890
Description
Equus caballus eca-mir-376c precursor miRNA
Gene family
MIPF0000091; mir-368


Sequence

37 reads, 6 reads per million, 1 experiments
aaaagguggauauuccuucuauguuuauguuguuuaugguuaAACAUAGAGGAAAUUCCACGUuuu
((((.(((((..(((((.(((((((((.............))))))))))))))..))))).))))

Structure
    g     ua     u         uguug 
aaaa gugga  uuccu cuauguuua     u
|||| |||||  ||||| |||||||||     u
uuuU CACCU  AAGGA GAUACAAau     u
    G     UA     -         uggua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr24: 42911104-42911169 [+]
Clustered miRNAs
14 other miRNAs are < 10 kb from eca-mir-376c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-376c

Accession MIMAT0013145
Description Equus caballus eca-miR-376c mature miRNA
Sequence 43 - AACAUAGAGGAAAUUCCACGU - 63
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131