Stem-loop eca-mir-379

Accession

MI0012892

Description

Equus caballus eca-mir-379 precursor miRNA

Literature search

2 open access papers mention eca-mir-379
(8 sentences)

Sequence

827133 reads, 783.0 reads per million, 196 experiments

agagaUGGUAGACUAUGGAACGUAGGcuuuaugauuuuugaccUAUGUAACAUGGUCCACUAACucu
((((.((((.(((((((..((((((((............).)))))))..))))))).)))).))))

Structure

    a    A       GA       - uuuau 
agag UGGU GACUAUG  ACGUAGG c     g
|||| |||| |||||||  ||||||| |      
ucuC AUCA CUGGUAC  UGUAUcc g     a
    A    C       AA       a uuuuu 

Annotation confidence High

Genome context

24: 43333273-43333339 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from eca-mir-379

Mature eca-miR-379-5p

• Accession: MIMAT0013147
• Description: Equus caballus eca-miR-379-5p mature miRNA
• Sequence: 6 - UGGUAGACUAUGGAACGUAGG - 26
• Evidence: experimental ; Illumina [1]

Mature eca-miR-379-3p

• Accession: MIMAT0061115
• Description: Equus caballus eca-miR-379-3p mature miRNA
• Sequence: 44 - UAUGUAACAUGGUCCACUAAC - 64
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131