Stem-loop sequence eca-mir-380

Accession MI0012893
Description Equus caballus miR-380 stem-loop
Gene family MIPF0000126; mir-379
Stem-loop 
      guu       ga       -  gu 
aagacg   gaccaua  gcaugcg cu  c
||||||   |||||||  ||||||| ||  u
uucugc   cugguau  uguaugc gg  c
      -ac       aa       u  au
Get sequence
Genome context
Coordinates (EquCab2) Overlapping transcripts
24: 42897592-42897652 [+]
intergenic
Clustered miRNAs
< 10kb from eca-mir-380
eca-mir-379 24: 42894643-42894709 [+]
eca-mir-411 24: 42895895-42895976 [+]
eca-mir-299 24: 42896363-42896425 [+]
eca-mir-380 24: 42897592-42897652 [+]
eca-mir-1197 24: 42898113-42898232 [+]
eca-mir-323 24: 42898304-42898389 [+]
eca-mir-758 24: 42898599-42898683 [+]
eca-mir-329 24: 42899352-42899449 [+]
eca-mir-494 24: 42902171-42902251 [+]
eca-mir-1193 24: 42902577-42902697 [+]
eca-mir-543 24: 42904247-42904318 [+]
eca-mir-495 24: 42906084-42906165 [+]
Database links
  • ENTREZGENE: 100314907;MIR380

Mature sequence eca-miR-380

Accession MIMAT0013148
Sequence

40 -  

uauguaauaugguccacgucuu

 - 61

Get sequence
Evidence not experimental

References

1
PMID:19406225 "In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach" Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y Genomics. 94:125-131(2009).