miRBase entry: eca-mir-381

Stem-loop eca-mir-381


Accession
MI0012894
Description
Equus caballus eca-mir-381 precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

133 reads, 20 reads per million, 1 experiments
uacuuaaagcgagguugcccuuuguauauucgguuuauugacauagaaUAUACAAGGGCAAGCUCUCUGUgagua
((((((.((.(((.((((((((.((((((((.(((....)))...)))))))))))))))).))).)).))))))

Structure
      a  c   g        u        --g   u 
uacuua ag gag uugcccuu guauauuc   guu a
|||||| || ||| |||||||| ||||||||   |||  
augagU UC CUC AACGGGAA CAUAUaag   cag u
      G  U   G        -        aua   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr24: 42916054-42916128 [+]
Clustered miRNAs
16 other miRNAs are < 10 kb from eca-mir-381
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-381

Accession MIMAT0013149
Description Equus caballus eca-miR-381 mature miRNA
Sequence 49 - UAUACAAGGGCAAGCUCUCUGU - 70
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131