Stem-loop eca-mir-409

Accession

MI0012896

Description

Equus caballus eca-mir-409 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

8537 reads, 1292 reads per million, 1 experiments

ugguacucggggagAGGUUACCCGAGCAACUUUGCAUcuggacgacGAAUGUUGCUCGGUGAACCCCUuuucgguauca
((((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).)))))))))))))

Structure

      u       A    AC         -    - AUc 
ugguac cggggag GGUU  CCGAGCAAC UUUG C   u
|||||| ||||||| ||||  ||||||||| |||| |    
acuaug gcuuuUC CCAA  GGCUCGUUG AAGc g   g
      -       C    GU         U    a cag 

Annotation confidence High

Genome context

chr24: 42935634-42935712 [+]

Clustered miRNAs

10 other miRNAs are < 10 kb from eca-mir-409

Mature eca-miR-409-5p

• Accession: MIMAT0013151
• Description: Equus caballus eca-miR-409-5p mature miRNA
• Sequence: 15 - AGGUUACCCGAGCAACUUUGCAU - 37
• Evidence: not_experimental

Mature eca-miR-409-3p

• Accession: MIMAT0013152
• Description: Equus caballus eca-miR-409-3p mature miRNA
• Sequence: 47 - GAAUGUUGCUCGGUGAACCCCU - 68
• Evidence: not_experimental

References

1. PubMed ID: 19406225
   In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
   "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
   "Genomics (2009) 94:125-131