miRBase entry: eca-mir-487b

Stem-loop eca-mir-487b


Accession
MI0012905
Description
Equus caballus eca-mir-487b precursor miRNA
Gene family
MIPF0000018; mir-154


Sequence

646 reads, 98 reads per million, 1 experiments
uugguacuuggagagugguuaucccuguccuguucguuuuaauuacgucgAAUCGUACAGGGUCAUCCACUUuuucaguaucaa
.(((((((.(((((((((....((((((.(.(((((............))))).).))))))....))))))))).))))))).

Structure
u       u         uuau      c u     uuuua 
 ugguacu ggagagugg    cccugu c guucg     a
 ||||||| |||||||||    |||||| | |||||      
 acuauga uuuUUCACC    GGGACA G UAAgc     u
a       c         UACU      U C     ugcau 


Annotation confidence Not enough data
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Genome context
chr24: 42916520-42916603 [+]
Clustered miRNAs
15 other miRNAs are < 10 kb from eca-mir-487b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature eca-miR-487b

Accession MIMAT0013162
Description Equus caballus eca-miR-487b mature miRNA
Sequence 51 - AAUCGUACAGGGUCAUCCACUU - 72
Evidence not_experimental

References

  1. PubMed ID: 19406225
    In silico detection and characteristics of novel microRNA genes in the Equus caballus genome using an integrated ab initio and comparative genomic approach
    "Zhou M, Wang Q, Sun J, Li X, Xu L, Yang H, Shi H, Ning S, Chen L, Li Y, He T, Zheng Y"
    "Genomics (2009) 94:125-131